Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lpxtg-motif protein cell wall anchor domain protein | HMPREF1862_00931 | Not Available | Positive | 1004788 - 1005483 | 24485.6 |
| ribosomal protein s10 | HMPREF1862_00932 | Not Available | Positive | 1005991 - 1006299 | 11592.2 |
| 50s ribosomal protein l3 | HMPREF1862_00933 | Not Available | Positive | 1006311 - 1006979 | 23493.6 |
| 50s ribosomal protein l4 | HMPREF1862_00934 | Not Available | Positive | 1006982 - 1007626 | 23572.3 |
| ribosomal protein l23 | HMPREF1862_00935 | Not Available | Positive | 1007631 - 1007936 | 11445.0 |
| ribosomal protein l2 | HMPREF1862_00936 | Not Available | Positive | 1007951 - 1008787 | 30775.1 |
| ribosomal protein s19 | HMPREF1862_00937 | Not Available | Positive | 1008802 - 1009083 | 10723.0 |
| ribosomal protein l22 | HMPREF1862_00938 | Not Available | Positive | 1009111 - 1009479 | 13772.5 |
| ribosomal protein s3 | HMPREF1862_00939 | Not Available | Positive | 1009479 - 1010375 | 32755.7 |
| ribosomal protein l16 | HMPREF1862_00940 | Not Available | Positive | 1010434 - 1010796 | 13468.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
