Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_00911 | Not Available | Negative | 984394 - 984519 | 4490.34 |
| nlpa lipoprotein | HMPREF1862_00912 | Not Available | Negative | 984564 - 985391 | 29935.9 |
| putative d-methionine transport system permease protein meti | HMPREF1862_00913 | Not Available | Negative | 985578 - 986318 | 26095.8 |
| abc transporter, atp-binding protein | HMPREF1862_00914 | Not Available | Negative | 986315 - 987337 | 36542.9 |
| pyridoxal-phosphate dependent trpb-like enzyme | HMPREF1862_00915 | Not Available | Positive | 987671 - 988975 | 47281.2 |
| hypothetical protein | HMPREF1862_00916 | Not Available | Negative | 989058 - 990602 | 55228.1 |
| naphthoate synthase | HMPREF1862_00917 | Not Available | Positive | 991133 - 992224 | 40106.1 |
| putative o-succinylbenzoate synthase | HMPREF1862_00918 | Not Available | Positive | 992339 - 993421 | 39083.7 |
| putative 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylic-acid synthase | HMPREF1862_00919 | Not Available | Positive | 993466 - 995577 | 74340.3 |
| repeat protein | HMPREF1862_00921 | Not Available | Negative | 995766 - 996701 | 33436.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
