Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative atp-dependent helicase hrpb | HMPREF1862_00901 | Not Available | Positive | 972462 - 975119 | 96628.3 |
| phosphoglucomutase, alpha-d-glucose phosphate-specific | HMPREF1862_00902 | Not Available | Negative | 975194 - 976864 | 59811.0 |
| cytidine and deoxycytidylate deaminase zinc-binding region | HMPREF1862_00903 | Not Available | Positive | 976949 - 977527 | 20812.8 |
| n-acetylmuramoyl-l-alanine amidase | HMPREF1862_00904 | Not Available | Negative | 977614 - 978012 | 13766.3 |
| bacteriocin cerein 7b domain protein | HMPREF1862_00905 | Not Available | Positive | 978236 - 978469 | 7463.34 |
| methylmalonate-semialdehyde dehydrogenase | HMPREF1862_00906 | Not Available | Positive | 978797 - 980299 | 53703.2 |
| pyridoxal 5'-phosphate synthase, glutaminase subunit pdx2 | HMPREF1862_00907 | Not Available | Negative | 980315 - 980884 | 20433.1 |
| pyridoxal 5'-phosphate synthase, synthase subunit pdx1 | HMPREF1862_00908 | Not Available | Negative | 980920 - 981834 | 32631.6 |
| putative protein iolh | HMPREF1862_00909 | Not Available | Positive | 982244 - 983110 | 33591.6 |
| transcriptional regulator, laci family | HMPREF1862_00910 | Not Available | Positive | 983363 - 984397 | 38509.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
