Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative aldehyde dehydrogenase | HMPREF1862_00882 | Not Available | Positive | 956133 - 957542 | 52348.6 |
| Tmrna,resume consensus sequence (at 94): gttaaatggtaataaatc | Not Available | Not Available | Positive | 958064 - 958355 | Not Available |
| carbonate dehydratase | HMPREF1862_00883 | Not Available | Negative | 957646 - 958131 | 17768.4 |
| Trna-ala | Not Available | Not Available | Positive | 958282 - 958357 | Not Available |
| hypothetical protein | HMPREF1862_00885 | Not Available | Positive | 958577 - 958717 | 5310.23 |
| hypothetical protein | HMPREF1862_00886 | Not Available | Positive | 959030 - 959317 | 10993.9 |
| hypothetical protein | HMPREF1862_00887 | Not Available | Positive | 959376 - 959651 | 10737.6 |
| hypothetical protein | HMPREF1862_00888 | Not Available | Positive | 960223 - 961956 | 67883.5 |
| hypothetical protein | HMPREF1862_00889 | Not Available | Positive | 962066 - 962746 | 24980.5 |
| putative glucose-specific phosphotransferase enzyme iia component | HMPREF1862_00890 | Not Available | Positive | 962904 - 963401 | 17603.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
