Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_00069 | Not Available | Positive | 59786 - 60310 | 18813.1 |
| transcriptional regulator, merr family | HMPREF1862_00070 | Not Available | Positive | 60310 - 60522 | 7804.48 |
| hypothetical protein | HMPREF1862_00071 | Not Available | Positive | 60522 - 61226 | 26060.7 |
| hypothetical protein | HMPREF1862_00072 | Not Available | Positive | 61219 - 61461 | 9422.33 |
| hypothetical protein | HMPREF1862_00073 | Not Available | Negative | 61545 - 61811 | 10063.7 |
| hypothetical protein | HMPREF1862_00074 | Not Available | Negative | 61804 - 62574 | 28879.4 |
| hypothetical protein | HMPREF1862_00075 | Not Available | Positive | 62634 - 63311 | 24625.3 |
| site-specific recombinase, phage integrase family | HMPREF1862_00076 | Not Available | Negative | 63314 - 64276 | 35835.0 |
| chorismate synthase | HMPREF1862_00077 | Not Available | Negative | 64583 - 65794 | 42683.2 |
| hypothetical protein | HMPREF1862_00078 | Not Available | Negative | 65884 - 66534 | 23066.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
