Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetolactate synthase, small subunit | HMPREF1862_00872 | Not Available | Positive | 944442 - 944963 | 19134.3 |
| ketol-acid reductoisomerase | HMPREF1862_00873 | Not Available | Positive | 944966 - 945991 | 37079.6 |
| putative 3-isopropylmalate dehydrogenase | HMPREF1862_00874 | Not Available | Positive | 946152 - 947207 | 37372.4 |
| branched-chain-amino-acid transaminase | HMPREF1862_00875 | Not Available | Positive | 947308 - 948471 | 42130.5 |
| dihydroxy-acid dehydratase | HMPREF1862_00876 | Not Available | Positive | 948624 - 950450 | 64769.4 |
| hypothetical protein | HMPREF1862_00877 | Not Available | Negative | 950591 - 951085 | 17999.8 |
| carbohydrate kinase, fggy family protein | HMPREF1862_00878 | Not Available | Negative | 951082 - 952677 | 57689.0 |
| transcriptional regulator, tetr family | HMPREF1862_00879 | Not Available | Negative | 952677 - 953315 | 24261.0 |
| aminotransferase, class iii | HMPREF1862_00880 | Not Available | Positive | 953564 - 955033 | 53840.1 |
| putative l-ribulose-5-phosphate 4-epimerase | HMPREF1862_00881 | Not Available | Positive | 955030 - 956073 | 38539.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
