Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_00862 | Not Available | Negative | 931707 - 932057 | 13110.7 |
| hypothetical protein | HMPREF1862_00863 | Not Available | Positive | 932189 - 932668 | 17162.2 |
| dna-binding response regulator mtra | HMPREF1862_00864 | Not Available | Positive | 932751 - 933443 | 25790.9 |
| atpase/histidine kinase/dna gyrase b/hsp90 domain protein | HMPREF1862_00865 | Not Available | Positive | 933450 - 935426 | 71523.3 |
| hypothetical protein | HMPREF1862_00866 | Not Available | Positive | 935423 - 937207 | 65552.2 |
| phosphoribosyl transferase domain protein | HMPREF1862_00867 | Not Available | Positive | 937356 - 938105 | 26399.0 |
| ribosomal subunit interface protein | HMPREF1862_00868 | Not Available | Positive | 938255 - 938923 | 25657.3 |
| hypothetical protein | HMPREF1862_00869 | Not Available | Negative | 939086 - 940537 | 51873.0 |
| trka protein | HMPREF1862_00870 | Not Available | Negative | 940679 - 942301 | 56658.5 |
| acetolactate synthase, large subunit | HMPREF1862_00871 | Not Available | Positive | 942661 - 944445 | 63220.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
