Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atpase/histidine kinase/dna gyrase b/hsp90 domain protein | HMPREF1862_00852 | Not Available | Negative | 918247 - 919887 | 58825.0 |
| putative response regulator mpra | HMPREF1862_00853 | Not Available | Negative | 919887 - 920591 | 26090.2 |
| pantoate--beta-alanine ligase | HMPREF1862_00854 | Not Available | Positive | 920740 - 921591 | 30273.2 |
| lysine--trna ligase | HMPREF1862_00855 | Not Available | Positive | 921642 - 923183 | 57039.7 |
| methionine synthase, vitamin-b12 independent | HMPREF1862_00856 | Not Available | Positive | 923258 - 924445 | 43745.4 |
| mannose-6-phosphate isomerase, class i | HMPREF1862_00857 | Not Available | Positive | 924465 - 925649 | 42068.6 |
| hypothetical protein | HMPREF1862_00858 | Not Available | Positive | 925649 - 926425 | 27849.1 |
| transcription factor whib | HMPREF1862_00859 | Not Available | Positive | 926556 - 926849 | 11035.7 |
| hypothetical protein | HMPREF1862_00860 | Not Available | Positive | 926992 - 930291 | 118721.0 |
| hypothetical protein | HMPREF1862_00861 | Not Available | Positive | 930288 - 931613 | 44575.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
