Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| regulator of condensation | HMPREF1862_00842 | Not Available | Negative | 907402 - 908868 | 51682.5 |
| udp-glucose 4-epimerase | HMPREF1862_00843 | Not Available | Positive | 909068 - 910057 | 35990.9 |
| cell envelope-like function transcriptional attenuator common domain protein | HMPREF1862_00844 | Not Available | Negative | 910192 - 911097 | 32637.9 |
| cell envelope-like function transcriptional attenuator common domain protein | HMPREF1862_00845 | Not Available | Negative | 911634 - 912626 | 35456.1 |
| uracil-dna glycosylase | HMPREF1862_00847 | Not Available | Negative | 913008 - 913670 | 24111.0 |
| hypothetical protein | HMPREF1862_00846 | Not Available | Positive | 913669 - 913803 | 5103.33 |
| hypothetical protein | HMPREF1862_00848 | Not Available | Positive | 913775 - 914389 | 21487.3 |
| chaperonin grol | HMPREF1862_00849 | Not Available | Positive | 914698 - 916332 | 57528.7 |
| wxg100 family type vii secretion target | HMPREF1862_00850 | Not Available | Negative | 916505 - 916795 | 9487.93 |
| hypothetical protein | HMPREF1862_00851 | Not Available | Negative | 917016 - 918149 | 41950.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
