Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| septum formation initiator | HMPREF1862_00832 | Not Available | Positive | 894708 - 895196 | 18371.1 |
| hypothetical protein | HMPREF1862_00833 | Not Available | Positive | 895193 - 895720 | 18262.9 |
| ppx/gppa phosphatase family protein | HMPREF1862_00834 | Not Available | Positive | 895805 - 896803 | 35507.5 |
| dolichyl-phosphate-mannose-protein mannosyltransferase | HMPREF1862_00835 | Not Available | Negative | 896847 - 898616 | 66163.8 |
| s-adenosylmethionine-dependent methyltransferase, yral family | HMPREF1862_00836 | Not Available | Positive | 898627 - 899475 | 30412.7 |
| methionine--trna ligase | HMPREF1862_00837 | Not Available | Positive | 899527 - 901329 | 67381.9 |
| bnr/asp-box repeat protein | HMPREF1862_00838 | Not Available | Positive | 901356 - 902900 | 55643.0 |
| putative atp-dependent dna helicase pcra | HMPREF1862_00839 | Not Available | Positive | 902921 - 905557 | 95935.1 |
| malate dehydrogenase | HMPREF1862_00840 | Not Available | Negative | 905703 - 906701 | 34819.5 |
| gtra-like protein | HMPREF1862_00841 | Not Available | Negative | 906946 - 907392 | 16739.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
