Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| toxin-antitoxin system, toxin component, rele family | HMPREF1862_00822 | Not Available | Positive | 880300 - 880638 | 13684.7 |
| diaminopimelate decarboxylase | HMPREF1862_00823 | Not Available | Positive | 880803 - 882188 | 48494.0 |
| homoserine dehydrogenase | HMPREF1862_00824 | Not Available | Positive | 882283 - 883578 | 45555.4 |
| threonine synthase | HMPREF1862_00825 | Not Available | Positive | 883582 - 884685 | 38218.4 |
| homoserine kinase | HMPREF1862_00826 | Not Available | Positive | 884701 - 885711 | 36463.3 |
| transcription termination factor rho | HMPREF1862_00827 | Not Available | Positive | 885981 - 887633 | 61119.6 |
| hypothetical protein | HMPREF1862_00828 | Not Available | Positive | 887983 - 888426 | 15128.6 |
| transcription-repair coupling factor | HMPREF1862_00829 | Not Available | Positive | 888531 - 892283 | 136171.0 |
| hypothetical protein | HMPREF1862_00830 | Not Available | Positive | 892343 - 893047 | 25505.4 |
| phosphopyruvate hydratase | HMPREF1862_00831 | Not Available | Positive | 893150 - 894436 | 45719.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
