Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_00802 | Not Available | Positive | 863277 - 863771 | 17150.6 |
| hypothetical protein | HMPREF1862_00803 | Not Available | Positive | 863875 - 864399 | 19160.1 |
| dna repair protein rada | HMPREF1862_00804 | Not Available | Negative | 864455 - 865846 | 48728.0 |
| trka protein | HMPREF1862_00805 | Not Available | Positive | 865947 - 866615 | 23556.4 |
| putative ktr system potassium uptake protein b | HMPREF1862_00806 | Not Available | Negative | 866764 - 868140 | 49085.3 |
| dna binding domain, excisionase family | HMPREF1862_00807 | Not Available | Positive | 868449 - 868691 | 8730.57 |
| hypothetical protein | HMPREF1862_00808 | Not Available | Positive | 868717 - 868839 | 4399.28 |
| transcription factor whib | HMPREF1862_00809 | Not Available | Negative | 868990 - 869292 | 11516.4 |
| inosine-5'-monophosphate dehydrogenase | HMPREF1862_00810 | Not Available | Positive | 869637 - 871145 | 53418.3 |
| exonuclease | HMPREF1862_00811 | Not Available | Positive | 871228 - 871890 | 25209.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
