Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_00792 | Not Available | Negative | 851990 - 852124 | 4813.97 |
| nlpc/p60 family protein | HMPREF1862_00793 | Not Available | Negative | 852159 - 853505 | 48115.3 |
| inorganic diphosphatase | HMPREF1862_00794 | Not Available | Negative | 853766 - 854314 | 21145.8 |
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase | HMPREF1862_00795 | Not Available | Positive | 854440 - 855882 | 49836.3 |
| trna(ile)-lysidine synthetase | HMPREF1862_00796 | Not Available | Positive | 855879 - 856964 | 38963.9 |
| hypoxanthine phosphoribosyltransferase | HMPREF1862_00797 | Not Available | Positive | 856974 - 857525 | 20119.2 |
| atp-dependent metallopeptidase hflb | HMPREF1862_00798 | Not Available | Positive | 857697 - 859694 | 72762.4 |
| gtp cyclohydrolase i | HMPREF1862_00799 | Not Available | Positive | 859698 - 860264 | 20897.4 |
| dihydropteroate synthase | HMPREF1862_00800 | Not Available | Positive | 860361 - 861245 | 30811.8 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | HMPREF1862_00801 | Not Available | Positive | 861236 - 863272 | 73036.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
