Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative aspartate transaminase | HMPREF1862_00772 | Not Available | Negative | 835684 - 836901 | 44063.8 |
| Trna-trp | Not Available | Not Available | Positive | 837113 - 837188 | Not Available |
| preprotein translocase, sece subunit | HMPREF1862_00774 | Not Available | Positive | 837271 - 837519 | 9078.2 |
| transcription termination/antitermination factor nusg | HMPREF1862_00775 | Not Available | Positive | 837534 - 838445 | 33507.0 |
| ribosomal protein l11 | HMPREF1862_00776 | Not Available | Positive | 838607 - 839041 | 15175.4 |
| ribosomal protein l1 | HMPREF1862_00777 | Not Available | Positive | 839074 - 839838 | 27816.6 |
| hypothetical protein | HMPREF1862_00778 | Not Available | Positive | 839900 - 840103 | 7456.18 |
| feoa domain protein | HMPREF1862_00779 | Not Available | Negative | 840100 - 840312 | 7991.74 |
| hypothetical protein | HMPREF1862_00780 | Not Available | Negative | 840333 - 840554 | 7779.49 |
| ferrous iron transport protein b | HMPREF1862_00782 | Not Available | Negative | 840570 - 842537 | 71348.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
