Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, luxr family | HMPREF1862_00762 | Not Available | Positive | 826379 - 827068 | 24230.5 |
| glycerophosphodiester phosphodiesterase family protein | HMPREF1862_00763 | Not Available | Positive | 827170 - 827904 | 26968.0 |
| udp-n-acetylenolpyruvoylglucosamine reductase domain protein | HMPREF1862_00764 | Not Available | Negative | 827901 - 829172 | 45199.3 |
| sugar-binding domain protein | HMPREF1862_00765 | Not Available | Negative | 829182 - 830204 | 37462.1 |
| hypothetical protein | HMPREF1862_00767 | Not Available | Negative | 830235 - 830384 | 5928.28 |
| channel protein, mip family | HMPREF1862_00766 | Not Available | Positive | 830372 - 831193 | 28539.5 |
| glycerol kinase | HMPREF1862_00768 | Not Available | Positive | 831243 - 832769 | 56354.5 |
| putative transcriptional regulatory protein prra | HMPREF1862_00769 | Not Available | Negative | 832898 - 833569 | 24452.4 |
| atpase/histidine kinase/dna gyrase b/hsp90 domain protein | HMPREF1862_00770 | Not Available | Negative | 833573 - 835069 | 53917.3 |
| hypothetical protein | HMPREF1862_00771 | Not Available | Negative | 835390 - 835590 | 6719.23 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
