Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polyphosphate kinase 1 | HMPREF1862_00752 | Not Available | Negative | 812264 - 815062 | 103648.0 |
| hypothetical protein | HMPREF1862_00753 | Not Available | Negative | 815125 - 815715 | 21638.7 |
| putative nadph-ferredoxin reductase fpra | HMPREF1862_00754 | Not Available | Positive | 815968 - 817404 | 52103.5 |
| peptidase, m48 family | HMPREF1862_00755 | Not Available | Negative | 817529 - 818410 | 31484.4 |
| efflux abc transporter, permease protein | HMPREF1862_00756 | Not Available | Negative | 818622 - 821441 | 99800.9 |
| abc transporter, atp-binding protein | HMPREF1862_00757 | Not Available | Negative | 821442 - 822092 | 23273.2 |
| hypothetical protein | HMPREF1862_00758 | Not Available | Positive | 822157 - 822528 | 11861.3 |
| hypothetical protein | HMPREF1862_00759 | Not Available | Negative | 822661 - 824289 | 60485.2 |
| abc transporter, atp-binding protein | HMPREF1862_00760 | Not Available | Negative | 824290 - 824997 | 25553.0 |
| atpase/histidine kinase/dna gyrase b/hsp90 domain protein | HMPREF1862_00761 | Not Available | Positive | 825129 - 826382 | 45224.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
