Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidyl-prolyl cis-trans isomerase b | HMPREF1862_00742 | Not Available | Positive | 797409 - 797918 | 18340.5 |
| peptidase, s54 family | HMPREF1862_00743 | Not Available | Positive | 797969 - 798682 | 25318.7 |
| hypothetical protein | HMPREF1862_00744 | Not Available | Negative | 798679 - 798888 | 7650.47 |
| negative regulator of genetic competence clpc/mecb | HMPREF1862_00745 | Not Available | Positive | 798904 - 801378 | 91870.8 |
| hypothetical protein | HMPREF1862_00746 | Not Available | Positive | 801474 - 802244 | 28460.3 |
| hypothetical protein | HMPREF1862_00747 | Not Available | Positive | 802237 - 804480 | 78556.1 |
| aldehyde dehydrogenase family protein | HMPREF1862_00748 | Not Available | Negative | 804641 - 808135 | 127469.0 |
| sodium/proline symporter | HMPREF1862_00749 | Not Available | Negative | 808305 - 809969 | 59028.4 |
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | HMPREF1862_00750 | Not Available | Negative | 810407 - 810829 | 14411.0 |
| hydrolase, nudix family | HMPREF1862_00751 | Not Available | Negative | 811106 - 812113 | 37242.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
