Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transporter, major facilitator family protein | HMPREF1862_00712 | Not Available | Negative | 758482 - 759894 | 50029.9 |
| putative 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase | HMPREF1862_00713 | Not Available | Negative | 759908 - 760681 | 26994.3 |
| card-like protein | HMPREF1862_00714 | Not Available | Negative | 760699 - 761214 | 19168.8 |
| ser/thr phosphatase family protein | HMPREF1862_00715 | Not Available | Negative | 761404 - 762510 | 40115.7 |
| transglycosylase | HMPREF1862_00716 | Not Available | Negative | 762541 - 764742 | 78764.4 |
| transcription factor whib | HMPREF1862_00717 | Not Available | Positive | 764926 - 765258 | 12654.8 |
| hypothetical protein | HMPREF1862_00718 | Not Available | Positive | 765286 - 765447 | 6025.1 |
| endoribonuclease l-psp | HMPREF1862_00719 | Not Available | Positive | 765449 - 765919 | 15674.8 |
| hypothetical protein | HMPREF1862_00720 | Not Available | Negative | 765931 - 766278 | 12027.9 |
| transporter, major facilitator family protein | HMPREF1862_00721 | Not Available | Negative | 766282 - 767775 | 52756.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
