Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_00702 | Not Available | Positive | 744614 - 745393 | 28532.6 |
| sugar-binding domain protein | HMPREF1862_00703 | Not Available | Negative | 745548 - 746507 | 34282.7 |
| transporter, betaine/carnitine/choline family | HMPREF1862_00704 | Not Available | Positive | 746764 - 748833 | 75325.9 |
| hypothetical protein | HMPREF1862_00705 | Not Available | Positive | 749024 - 749392 | 13691.3 |
| copper-exporting atpase | HMPREF1862_00706 | Not Available | Negative | 749431 - 751683 | 78115.9 |
| Trna-thr | Not Available | Not Available | Positive | 751843 - 751915 | Not Available |
| hypothetical protein | HMPREF1862_00708 | Not Available | Negative | 751941 - 754049 | 76250.3 |
| dihydroxyacetone kinase, phosphotransfer subunit | HMPREF1862_00709 | Not Available | Negative | 754275 - 756722 | 85477.8 |
| dihydroxyacetone kinase, l subunit | HMPREF1862_00710 | Not Available | Negative | 756744 - 757364 | 21071.1 |
| dihydroxyacetone kinase, dhak subunit | HMPREF1862_00711 | Not Available | Negative | 757358 - 758359 | 34979.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
