Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dtmp kinase | HMPREF1862_00692 | Not Available | Positive | 733296 - 734045 | 27068.1 |
| dna polymerase iii, delta' subunit | HMPREF1862_00693 | Not Available | Positive | 734042 - 735235 | 43676.8 |
| tap-like protein | HMPREF1862_00694 | Not Available | Positive | 735239 - 736804 | 56163.4 |
| crcb domain protein | HMPREF1862_00695 | Not Available | Positive | 736822 - 737340 | 18052.1 |
| crcb-like protein | HMPREF1862_00696 | Not Available | Positive | 737340 - 737729 | 13417.6 |
| Trna-pro | Not Available | Not Available | Positive | 737848 - 737924 | Not Available |
| hypothetical protein | HMPREF1862_00698 | Not Available | Positive | 738784 - 740007 | 42798.3 |
| putative sugar abc transporter, atp binding protein | HMPREF1862_00699 | Not Available | Positive | 740004 - 741539 | 55446.9 |
| putative ribose transport system permease protein rbsc | HMPREF1862_00700 | Not Available | Positive | 741532 - 742494 | 33407.9 |
| glycosyl hydrolase family 35 | HMPREF1862_00701 | Not Available | Positive | 742551 - 744596 | 76390.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
