Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative sporulation initiation inhibitor protein soj | HMPREF1862_00662 | Not Available | Negative | 700272 - 701177 | 32793.6 |
| 16s rrna methyltransferase gidb | HMPREF1862_00663 | Not Available | Negative | 701211 - 701864 | 23939.4 |
| r3h domain protein | HMPREF1862_00664 | Not Available | Negative | 701926 - 702450 | 19048.0 |
| membrane protein insertase, yidc/oxa1 family | HMPREF1862_00665 | Not Available | Negative | 702486 - 703862 | 51994.9 |
| hypothetical protein | HMPREF1862_00666 | Not Available | Negative | 703882 - 704031 | 5525.44 |
| ribonuclease p protein component | HMPREF1862_00667 | Not Available | Negative | 704205 - 704558 | 12695.6 |
| ribosomal protein l34 | HMPREF1862_00668 | Not Available | Negative | 704562 - 704699 | 5393.7 |
| hypothetical protein | HMPREF1862_00669 | Not Available | Negative | 704858 - 704977 | 4460.53 |
| replication initiator protein dnaa | HMPREF1862_00670 | Not Available | Positive | 705098 - 706510 | 52752.9 |
| hypothetical protein | HMPREF1862_00671 | Not Available | Negative | 706740 - 706883 | 5803.92 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
