Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_00652 | Not Available | Positive | 689872 - 691173 | 45448.8 |
| heavy metal-associated domain protein | HMPREF1862_00653 | Not Available | Positive | 691350 - 691622 | 10242.3 |
| snare-like domain protein | HMPREF1862_00654 | Not Available | Negative | 691654 - 692313 | 24060.3 |
| hypothetical protein | HMPREF1862_00655 | Not Available | Positive | 692446 - 695013 | 92804.9 |
| dsba-like protein | HMPREF1862_00656 | Not Available | Positive | 695074 - 695901 | 29474.5 |
| cytochrome c biogenesis protein transmembrane region | HMPREF1862_00657 | Not Available | Positive | 695901 - 696761 | 30155.2 |
| aminotransferase, class i/ii | HMPREF1862_00658 | Not Available | Positive | 696860 - 698131 | 46958.1 |
| d-ala d-ala ligase protein | HMPREF1862_00659 | Not Available | Positive | 698124 - 699086 | 35214.3 |
| putative stage 0 sporulation protein j | HMPREF1862_00660 | Not Available | Negative | 699124 - 700026 | 33279.1 |
| hypothetical protein | HMPREF1862_00661 | Not Available | Negative | 700050 - 700199 | 6182.91 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
