Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pap2 family protein | HMPREF1862_00642 | Not Available | Negative | 678690 - 679604 | 32988.2 |
| dead/deah box helicase | HMPREF1862_00643 | Not Available | Positive | 679707 - 682151 | 88902.7 |
| tade-like protein | HMPREF1862_00644 | Not Available | Negative | 682162 - 682542 | 12818.4 |
| hypothetical protein | HMPREF1862_00645 | Not Available | Negative | 682539 - 682874 | 11040.3 |
| hypothetical protein | HMPREF1862_00646 | Not Available | Negative | 682945 - 683157 | 7351.17 |
| glutamate-1-semialdehyde-2,1-aminomutase | HMPREF1862_00647 | Not Available | Positive | 683245 - 684723 | 51862.4 |
| hypothetical protein | HMPREF1862_00648 | Not Available | Positive | 684881 - 686257 | 47681.6 |
| hypothetical protein | HMPREF1862_00649 | Not Available | Positive | 686258 - 686974 | 25980.2 |
| histidinol-phosphate transaminase | HMPREF1862_00650 | Not Available | Negative | 687009 - 688064 | 36952.3 |
| putative adenylosuccinate lyase | HMPREF1862_00651 | Not Available | Positive | 688204 - 689658 | 53672.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
