Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lsr2 family protein | HMPREF1862_00632 | Not Available | Positive | 666194 - 666517 | 12116.5 |
| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase | HMPREF1862_00633 | Not Available | Positive | 666571 - 667305 | 27740.9 |
| abc transporter, atp-binding protein | HMPREF1862_00634 | Not Available | Positive | 667641 - 668774 | 41129.5 |
| hypothetical protein | HMPREF1862_00635 | Not Available | Negative | 669007 - 670839 | 66189.8 |
| hypothetical protein | HMPREF1862_00636 | Not Available | Negative | 670865 - 671017 | 5755.22 |
| dna topoisomerase i | HMPREF1862_00637 | Not Available | Positive | 671460 - 674189 | 100232.0 |
| hypothetical protein | HMPREF1862_00638 | Not Available | Negative | 674372 - 675721 | 47306.0 |
| anaerobic ribonucleoside-triphosphate reductase activating protein | HMPREF1862_00639 | Not Available | Negative | 675877 - 676623 | 26810.2 |
| anaerobic ribonucleoside-triphosphate reductase | HMPREF1862_00641 | Not Available | Negative | 676616 - 678439 | 68394.6 |
| hypothetical protein | HMPREF1862_00640 | Not Available | Positive | 678433 - 678579 | 5486.54 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
