Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein | HMPREF1862_00582 | Not Available | Negative | 626926 - 627117 | 7244.59 |
| hypothetical protein | HMPREF1862_00583 | Not Available | Positive | 627337 - 627867 | 18864.1 |
| acetyltransferase, gnat family | HMPREF1862_00584 | Not Available | Negative | 628027 - 628557 | 19416.3 |
| toxin-antitoxin system, antitoxin component, xre domain protein | HMPREF1862_00585 | Not Available | Negative | 628557 - 629162 | 23265.2 |
| lpxtg-motif protein cell wall anchor domain protein | HMPREF1862_00586 | Not Available | Positive | 629392 - 632241 | 102674.0 |
| lpxtg-motif protein cell wall anchor domain protein | HMPREF1862_00587 | Not Available | Positive | 632336 - 633661 | 46570.8 |
| hypothetical protein | HMPREF1862_00588 | Not Available | Positive | 633740 - 633943 | 7538.83 |
| dna-binding helix-turn-helix protein | HMPREF1862_00589 | Not Available | Positive | 634185 - 634443 | 9864.22 |
| dna-binding helix-turn-helix protein | HMPREF1862_00590 | Not Available | Positive | 634478 - 634717 | 8969.03 |
| hypothetical protein | HMPREF1862_00591 | Not Available | Positive | 634718 - 635002 | 10377.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
