Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_00038 | Not Available | Negative | 31864 - 32016 | 5670.94 |
| ftr1 family protein | HMPREF1862_00039 | Not Available | Negative | 32017 - 32898 | 32208.2 |
| transcriptional regulator, tetr family | HMPREF1862_00040 | Not Available | Positive | 33210 - 33929 | 26608.4 |
| hypothetical protein | HMPREF1862_00041 | Not Available | Positive | 34094 - 35344 | 43591.6 |
| aspartate-semialdehyde dehydrogenase | HMPREF1862_00042 | Not Available | Negative | 35476 - 36525 | 37083.2 |
| aspartate kinase ii | HMPREF1862_00043 | Not Available | Negative | 36522 - 37829 | 46240.3 |
| recombination protein recr | HMPREF1862_00044 | Not Available | Negative | 38016 - 38612 | 21414.9 |
| dna polymerase iii, subunit gamma and tau | HMPREF1862_00045 | Not Available | Negative | 38618 - 41002 | 83658.2 |
| hypothetical protein | HMPREF1862_00047 | Not Available | Negative | 41446 - 41586 | 4863.79 |
| Trna-ser | Not Available | Not Available | Positive | 41611 - 41698 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
