Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_00562 | Not Available | Negative | 614750 - 615190 | 16539.8 |
| hypothetical protein | HMPREF1862_00563 | Not Available | Negative | 615314 - 615703 | 13674.2 |
| hypothetical protein | HMPREF1862_00564 | Not Available | Negative | 615700 - 616098 | 15545.4 |
| hypothetical protein | HMPREF1862_00565 | Not Available | Positive | 616239 - 616766 | 18235.4 |
| hypothetical protein | HMPREF1862_00566 | Not Available | Positive | 616893 - 618890 | 71344.4 |
| lpxtg-motif protein cell wall anchor domain protein | HMPREF1862_00567 | Not Available | Positive | 618862 - 621204 | 85197.8 |
| hypothetical protein | HMPREF1862_00568 | Not Available | Positive | 621331 - 621567 | 8538.55 |
| yqaj viral recombinase family protein | HMPREF1862_00569 | Not Available | Positive | 621678 - 622607 | 34501.2 |
| dna-binding helix-turn-helix protein | HMPREF1862_00570 | Not Available | Positive | 622624 - 622851 | 8193.99 |
| hypothetical protein | HMPREF1862_00571 | Not Available | Positive | 622855 - 623172 | 12011.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
