Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_00532 | Not Available | Positive | 580776 - 581123 | 12208.8 |
| lipoyl synthase | HMPREF1862_00533 | Not Available | Negative | 581182 - 582198 | 37711.0 |
| lipoyl(octanoyl) transferase | HMPREF1862_00534 | Not Available | Negative | 582182 - 582847 | 24327.0 |
| homoserine o-acetyltransferase | HMPREF1862_00535 | Not Available | Negative | 582906 - 584093 | 42401.8 |
| o-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase | HMPREF1862_00536 | Not Available | Negative | 584136 - 585430 | 46077.0 |
| hypothetical protein | HMPREF1862_00537 | Not Available | Positive | 585636 - 586784 | 43905.2 |
| hypothetical protein | HMPREF1862_00538 | Not Available | Positive | 586990 - 587163 | 6324.9 |
| hypothetical protein | HMPREF1862_00539 | Not Available | Positive | 587160 - 587741 | 21149.0 |
| ftsk/spoiiie family protein | HMPREF1862_00540 | Not Available | Positive | 587741 - 591490 | 134823.0 |
| hypothetical protein | HMPREF1862_00541 | Not Available | Positive | 591503 - 591877 | 14281.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
