Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphotransferase system, eiib | HMPREF1862_00522 | Not Available | Negative | 564844 - 565074 | 8064.77 |
| lpxtg-motif protein cell wall anchor domain protein | HMPREF1862_00523 | Not Available | Positive | 565279 - 568461 | 114099.0 |
| von willebrand factor type a domain protein | HMPREF1862_00524 | Not Available | Positive | 568881 - 570800 | 71251.6 |
| hypothetical protein | HMPREF1862_00526 | Not Available | Negative | 571083 - 571208 | 4700.08 |
| 6-o-methylguanine dna methyltransferase, dna binding domain protein | HMPREF1862_00525 | Not Available | Positive | 571186 - 571746 | 20293.8 |
| hypothetical protein | HMPREF1862_00527 | Not Available | Positive | 572020 - 572652 | 22489.4 |
| lpxtg-motif protein cell wall anchor domain protein | HMPREF1862_00528 | Not Available | Positive | 572685 - 577166 | 161642.0 |
| nitroreductase family protein | HMPREF1862_00529 | Not Available | Negative | 577276 - 578037 | 28707.5 |
| amp-binding enzyme | HMPREF1862_00530 | Not Available | Positive | 578176 - 579732 | 55084.8 |
| methyltransferase domain protein | HMPREF1862_00531 | Not Available | Positive | 580062 - 580742 | 24505.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
