Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_00512 | Not Available | Negative | 553095 - 553703 | 21812.5 |
| hypothetical protein | HMPREF1862_00513 | Not Available | Positive | 553820 - 556930 | 112828.0 |
| threonine ammonia-lyase | HMPREF1862_00514 | Not Available | Negative | 557070 - 558317 | 44298.0 |
| oligoribonuclease | HMPREF1862_00515 | Not Available | Positive | 558423 - 559049 | 23130.8 |
| Trna-arg | Not Available | Not Available | Positive | 559160 - 559235 | Not Available |
| hypothetical protein | HMPREF1862_00517 | Not Available | Positive | 559271 - 559411 | 5240.32 |
| single-strand binding family protein | HMPREF1862_00518 | Not Available | Positive | 559392 - 560066 | 23609.3 |
| atp-binding cassette protein, chvd family | HMPREF1862_00519 | Not Available | Positive | 560149 - 561840 | 62542.6 |
| 4-alpha-glucanotransferase | HMPREF1862_00520 | Not Available | Positive | 561887 - 564064 | 81929.1 |
| had hydrolase, family ia, variant 3 | HMPREF1862_00521 | Not Available | Negative | 564091 - 564831 | 26823.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
