Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_00502 | Not Available | Positive | 542372 - 542965 | 21967.6 |
| glutamate racemase | HMPREF1862_00503 | Not Available | Positive | 542976 - 543791 | 29496.4 |
| hypothetical protein | HMPREF1862_00504 | Not Available | Positive | 543788 - 544573 | 28642.7 |
| non-canonical purine ntp pyrophosphatase, rdgb/ham1 family | HMPREF1862_00505 | Not Available | Negative | 544594 - 545253 | 22789.4 |
| trna nucleotidyltransferase | HMPREF1862_00506 | Not Available | Negative | 545250 - 545984 | 26110.0 |
| hydrolase, nudix family | HMPREF1862_00507 | Not Available | Positive | 546157 - 547212 | 38867.1 |
| hrdc domain protein | HMPREF1862_00508 | Not Available | Positive | 547223 - 549268 | 74959.8 |
| hypothetical protein | HMPREF1862_00509 | Not Available | Negative | 549265 - 550206 | 34239.8 |
| putative hydrolase | HMPREF1862_00510 | Not Available | Negative | 550281 - 551915 | 59846.6 |
| hypothetical protein | HMPREF1862_00511 | Not Available | Positive | 552089 - 553126 | 36563.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
