Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_00492 | Not Available | Negative | 532717 - 533115 | 14820.2 |
| anaerobic ribonucleoside-triphosphate reductase | HMPREF1862_00493 | Not Available | Positive | 533628 - 535787 | 81940.5 |
| anaerobic ribonucleoside-triphosphate reductase activating protein | HMPREF1862_00494 | Not Available | Positive | 535797 - 536630 | 30938.6 |
| transposase | HMPREF1862_00495 | Not Available | Positive | 536756 - 537640 | 34298.9 |
| integrase core domain protein | HMPREF1862_00496 | Not Available | Positive | 537637 - 538548 | 34222.9 |
| hypothetical protein | HMPREF1862_00497 | Not Available | Positive | 538711 - 539337 | 23871.9 |
| Tmrna,resume consensus sequence (at 88): aataagtgctaaacataa | Not Available | Not Available | Positive | 539586 - 539964 | Not Available |
| hypothetical protein | HMPREF1862_00499 | Not Available | Positive | 540144 - 540548 | 14809.8 |
| nicotinate phosphoribosyltransferase | HMPREF1862_00500 | Not Available | Negative | 540545 - 542020 | 53220.8 |
| atp-dependent clp protease adaptor protein clps | HMPREF1862_00501 | Not Available | Positive | 542079 - 542375 | 11062.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
