Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_00482 | Not Available | Positive | 523821 - 523973 | 5326.39 |
| lpxtg-motif protein cell wall anchor domain protein | HMPREF1862_00483 | Not Available | Negative | 523951 - 525750 | 65214.0 |
| hypothetical protein | HMPREF1862_00485 | Not Available | Negative | 525877 - 526746 | 30055.5 |
| hypothetical protein | HMPREF1862_00484 | Not Available | Positive | 526745 - 526873 | 4791.88 |
| adp-ribosylglycohydrolase | HMPREF1862_00486 | Not Available | Negative | 526979 - 527821 | 31477.9 |
| aminotransferase, class i/ii | HMPREF1862_00487 | Not Available | Positive | 528088 - 529242 | 42044.3 |
| toxin-antitoxin system, toxin component, hica family | HMPREF1862_00488 | Not Available | Positive | 529379 - 529573 | 7279.96 |
| hypothetical protein | HMPREF1862_00489 | Not Available | Positive | 529570 - 529944 | 13329.0 |
| hypothetical protein | HMPREF1862_00490 | Not Available | Positive | 530793 - 531077 | 10405.8 |
| hypothetical protein | HMPREF1862_00491 | Not Available | Negative | 531149 - 532453 | 47692.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
