Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_00472 | Not Available | Negative | 510596 - 511879 | 45357.8 |
| transposase-like protein | HMPREF1862_00473 | Not Available | Positive | 511922 - 512320 | 15170.5 |
| transposase, is605 orfb family | HMPREF1862_00474 | Not Available | Positive | 512317 - 513459 | 42812.0 |
| putative ribonuclease d | HMPREF1862_00475 | Not Available | Negative | 513870 - 515075 | 46560.7 |
| hypothetical protein | HMPREF1862_00476 | Not Available | Negative | 515072 - 515650 | 20702.5 |
| hypothetical protein | HMPREF1862_00478 | Not Available | Negative | 515652 - 515900 | 9111.56 |
| atp-grasp domain protein | HMPREF1862_00477 | Not Available | Positive | 515871 - 517214 | 51066.5 |
| 4-alpha-d-((1->4)-alpha-d-glucano)trehalose trehalohydrolase | HMPREF1862_00479 | Not Available | Negative | 517287 - 519086 | 66707.3 |
| (1->4)-alpha-d-glucan 1-alpha-d-glucosylmutase | HMPREF1862_00480 | Not Available | Negative | 519087 - 521606 | 95197.9 |
| glycogen debranching enzyme glgx | HMPREF1862_00481 | Not Available | Negative | 521618 - 523762 | 81388.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
