Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_00462 | Not Available | Negative | 501781 - 502611 | 31616.6 |
| putative membrane-bound metal-dependent hydrolase | HMPREF1862_00463 | Not Available | Positive | 502709 - 503389 | 23093.6 |
| hypothetical protein | HMPREF1862_00464 | Not Available | Positive | 503382 - 503828 | 15745.1 |
| transposase, is605 family | HMPREF1862_00465 | Not Available | Positive | 503965 - 505374 | 53038.4 |
| hypothetical protein | HMPREF1862_00466 | Not Available | Positive | 505374 - 505952 | 20009.6 |
| hypothetical protein | HMPREF1862_00467 | Not Available | Positive | 505954 - 507645 | 61258.1 |
| hypothetical protein | HMPREF1862_00468 | Not Available | Negative | 508050 - 508577 | 18396.0 |
| transcription factor whib | HMPREF1862_00469 | Not Available | Positive | 508662 - 508889 | 8475.17 |
| hypothetical protein | HMPREF1862_00470 | Not Available | Negative | 508873 - 509784 | 33620.8 |
| hypothetical protein | HMPREF1862_00471 | Not Available | Negative | 509809 - 510453 | 23549.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
