Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-n-acetylmuramoyl-l-alanine--d-glutamate ligase | HMPREF1862_00452 | Not Available | Positive | 489104 - 490468 | 48384.2 |
| cell cycle protein, ftsw/roda/spove family | HMPREF1862_00453 | Not Available | Positive | 490471 - 491817 | 48388.6 |
| undecaprenyldiphospho-muramoylpentapeptide beta-n-acetylglucosaminyltransferase | HMPREF1862_00454 | Not Available | Positive | 491807 - 492928 | 40565.6 |
| udp-n-acetylmuramate--l-alanine ligase | HMPREF1862_00455 | Not Available | Positive | 492919 - 494331 | 50270.9 |
| potra domain protein, ftsq-type | HMPREF1862_00456 | Not Available | Positive | 494487 - 495215 | 26336.0 |
| leucine--trna ligase | HMPREF1862_00457 | Not Available | Positive | 495361 - 498258 | 108176.0 |
| aldose 1-epimerase | HMPREF1862_00458 | Not Available | Positive | 498350 - 499357 | 36634.4 |
| hypothetical protein | HMPREF1862_00459 | Not Available | Negative | 499447 - 499661 | 7906.51 |
| hypothetical protein | HMPREF1862_00460 | Not Available | Positive | 499939 - 500406 | 17063.6 |
| hypothetical protein | HMPREF1862_00461 | Not Available | Positive | 500424 - 501713 | 48354.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
