Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_00442 | Not Available | Negative | 476617 - 478899 | 83518.3 |
| hypothetical protein | HMPREF1862_00443 | Not Available | Positive | 479031 - 480353 | 48467.1 |
| putative dna polymerase iv | HMPREF1862_00444 | Not Available | Positive | 480357 - 481610 | 44710.0 |
| hypothetical protein | HMPREF1862_00445 | Not Available | Positive | 481667 - 482089 | 15557.8 |
| protein mraz | HMPREF1862_00446 | Not Available | Positive | 482327 - 482863 | 20032.4 |
| s-adenosyl-methyltransferase mraw | HMPREF1862_00447 | Not Available | Positive | 482982 - 483977 | 35895.0 |
| septum formation initiator | HMPREF1862_00448 | Not Available | Positive | 483970 - 484392 | 15209.7 |
| penicillin-binding protein, transpeptidase domain protein | HMPREF1862_00449 | Not Available | Positive | 484402 - 486348 | 68725.6 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | HMPREF1862_00450 | Not Available | Positive | 486388 - 487920 | 54349.7 |
| phospho-n-acetylmuramoyl-pentapeptide- transferase | HMPREF1862_00451 | Not Available | Positive | 487920 - 489032 | 39905.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
