Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminopeptidase p domain protein | HMPREF1862_00432 | Not Available | Negative | 468246 - 469820 | 57488.5 |
| tigr01244 family protein | HMPREF1862_00433 | Not Available | Positive | 469928 - 470707 | 27842.4 |
| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligase | HMPREF1862_00434 | Not Available | Positive | 470775 - 472355 | 56361.2 |
| osmc-like protein | HMPREF1862_00435 | Not Available | Negative | 472449 - 472853 | 14760.2 |
| Trna-met | Not Available | Not Available | Positive | 472931 - 473007 | Not Available |
| repressor lexa | HMPREF1862_00437 | Not Available | Negative | 473213 - 473953 | 26241.6 |
| hypothetical protein | HMPREF1862_00438 | Not Available | Positive | 474022 - 474645 | 22415.9 |
| hypothetical protein | HMPREF1862_00439 | Not Available | Positive | 474711 - 474845 | 4801.96 |
| transcriptional regulator nrdr | HMPREF1862_00440 | Not Available | Positive | 474882 - 475364 | 17790.8 |
| putative phosphoglycerate dehydrogenase | HMPREF1862_00441 | Not Available | Negative | 475333 - 476541 | 43663.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
