Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_00422 | Not Available | Positive | 454918 - 456606 | 63315.2 |
| abc transporter, substrate-binding protein, family 5 | HMPREF1862_00423 | Not Available | Positive | 456831 - 458432 | 57893.4 |
| lysine-specific permease | HMPREF1862_00424 | Not Available | Positive | 458543 - 459967 | 50423.1 |
| abc transporter, substrate-binding protein, family 5 | HMPREF1862_00425 | Not Available | Positive | 460209 - 461879 | 61012.5 |
| putative oligopeptide transport system permease protein oppb | HMPREF1862_00426 | Not Available | Positive | 462026 - 462952 | 33394.0 |
| putative oligopeptide abc transporter, permease protein oppc | HMPREF1862_00427 | Not Available | Positive | 462945 - 463892 | 34105.2 |
| putative phosphonate c-p lyase system protein phnk | HMPREF1862_00428 | Not Available | Positive | 463895 - 465760 | 67528.0 |
| abc transporter, substrate-binding protein, family 3 | HMPREF1862_00429 | Not Available | Positive | 465953 - 466759 | 29343.0 |
| putative arginine abc transporter, permease protein artq | HMPREF1862_00430 | Not Available | Positive | 466805 - 467458 | 24101.3 |
| glutamine abc transporter, atp-binding protein glnq | HMPREF1862_00431 | Not Available | Positive | 467455 - 468234 | 28758.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
