Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative membrane-bound hydrogenase 1 large subunit | HMPREF1862_00412 | Not Available | Positive | 447383 - 449125 | 64352.5 |
| ni/fe-hydrogenase, b-type cytochrome subunit | HMPREF1862_00413 | Not Available | Positive | 449122 - 450435 | 49237.8 |
| hydrogenase 2 maturation protease family protein | HMPREF1862_00414 | Not Available | Positive | 450450 - 451097 | 22416.9 |
| putative hydrogenase nickel insertion protein hypa | HMPREF1862_00415 | Not Available | Negative | 451087 - 451443 | 12753.1 |
| hypothetical protein | HMPREF1862_00416 | Not Available | Positive | 451467 - 452726 | 45012.9 |
| hydrogenase assembly chaperone hypc/hupf | HMPREF1862_00417 | Not Available | Positive | 452783 - 453010 | 8137.98 |
| hypothetical protein | HMPREF1862_00418 | Not Available | Positive | 453101 - 453490 | 14091.3 |
| hypothetical protein | HMPREF1862_00419 | Not Available | Positive | 453501 - 453869 | 13591.5 |
| hypothetical protein | HMPREF1862_00420 | Not Available | Positive | 453989 - 454120 | 4778.55 |
| methyltransferase small domain protein | HMPREF1862_00421 | Not Available | Negative | 454184 - 454789 | 21288.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
