Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| femab family protein | HMPREF1862_00402 | Not Available | Negative | 435773 - 436723 | 36125.8 |
| pp_00390 | HMPREF1862_00403 | Not Available | Positive | 436967 - 438481 | Not Available |
| trna dimethylallyltransferase | HMPREF1862_00404 | Not Available | Positive | 438490 - 439428 | 34322.5 |
| hydrogenase expression/formation protein hypd | HMPREF1862_00405 | Not Available | Negative | 439715 - 440863 | 42484.2 |
| hydrogenase assembly chaperone hypc/hupf | HMPREF1862_00406 | Not Available | Negative | 440912 - 441178 | 9559.37 |
| hydrogenase expression/formation protein hype | HMPREF1862_00407 | Not Available | Positive | 441237 - 442409 | 40740.2 |
| carbamoyltransferase hypf | HMPREF1862_00408 | Not Available | Negative | 442461 - 444755 | 82948.8 |
| putative hydrogenase nickel insertion protein hypa | HMPREF1862_00409 | Not Available | Positive | 444876 - 445226 | 13165.0 |
| hydrogenase accessory protein hypb | HMPREF1862_00410 | Not Available | Positive | 445228 - 446016 | 29244.3 |
| putative hydrogenase-2 small chain | HMPREF1862_00411 | Not Available | Positive | 446148 - 447383 | 43196.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
