Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_00382 | Not Available | Negative | 417249 - 418136 | 32351.7 |
| hypothetical protein | HMPREF1862_00383 | Not Available | Negative | 418158 - 418961 | 29773.9 |
| riboflavin biosynthesis protein ribd | HMPREF1862_00384 | Not Available | Positive | 419263 - 420315 | 36684.0 |
| riboflavin synthase, alpha subunit | HMPREF1862_00385 | Not Available | Positive | 420300 - 420896 | 21244.6 |
| gtp cyclohydrolase ii | HMPREF1862_00386 | Not Available | Positive | 420893 - 422137 | 45164.0 |
| 6,7-dimethyl-8-ribityllumazine synthase | HMPREF1862_00387 | Not Available | Positive | 422181 - 422654 | 16391.8 |
| transcription repressor hrca | HMPREF1862_00388 | Not Available | Positive | 422804 - 423829 | 37608.0 |
| chaperone protein dnaj | HMPREF1862_00389 | Not Available | Positive | 423854 - 424960 | 39743.1 |
| rna methyltransferase, rsme family | HMPREF1862_00390 | Not Available | Positive | 424960 - 425742 | 27784.4 |
| putative phoh-like protein | HMPREF1862_00391 | Not Available | Positive | 425744 - 426703 | 34655.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
