Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_00019 | Not Available | Positive | 14515 - 14961 | 16177.2 |
| Trna-ala | Not Available | Not Available | Positive | 15124 - 15199 | Not Available |
| putative phosphoglycerate mutase | HMPREF1862_00021 | Not Available | Negative | 15339 - 15983 | 23250.6 |
| iojap-like protein | HMPREF1862_00022 | Not Available | Negative | 15991 - 16434 | 16214.2 |
| hypothetical protein | HMPREF1862_00023 | Not Available | Negative | 16444 - 18672 | 77388.9 |
| nicotinate-nucleotide adenylyltransferase | HMPREF1862_00024 | Not Available | Negative | 18672 - 19289 | 23102.7 |
| obg family gtpase cgta | HMPREF1862_00025 | Not Available | Negative | 19434 - 20954 | 53997.2 |
| ribosomal protein l27 | HMPREF1862_00026 | Not Available | Negative | 21070 - 21321 | 8820.5 |
| ribosomal protein l21 | HMPREF1862_00027 | Not Available | Negative | 21346 - 21735 | 14207.6 |
| Trna-his | Not Available | Not Available | Positive | 21870 - 21945 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
