Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartyl/glutamyl-trna(asn/gln) amidotransferase, b subunit | HMPREF1862_00372 | Not Available | Positive | 406896 - 408392 | 54503.9 |
| hypothetical protein | HMPREF1862_00373 | Not Available | Negative | 408557 - 408988 | 15644.0 |
| macro domain protein | HMPREF1862_00374 | Not Available | Negative | 408991 - 409518 | 18471.1 |
| peptide-methionine (s)-s-oxide reductase | HMPREF1862_00375 | Not Available | Negative | 409509 - 410030 | 19590.8 |
| ribosomal protein s20 | HMPREF1862_00376 | Not Available | Negative | 410359 - 410625 | 10121.4 |
| heat shock protein 15 family protein | HMPREF1862_00377 | Not Available | Negative | 410967 - 411398 | 15900.2 |
| luciferase family oxidoreductase, fmn-dependent, pp_0088 family | HMPREF1862_00378 | Not Available | Positive | 411544 - 413160 | 57751.5 |
| gtp-binding protein lepa | HMPREF1862_00379 | Not Available | Positive | 413230 - 415077 | 67546.0 |
| trna (guanine-n(7)-)-methyltransferase | HMPREF1862_00380 | Not Available | Positive | 415081 - 415947 | 31915.1 |
| putative oxygen-independent coproporphyrinogen iii oxidase | HMPREF1862_00381 | Not Available | Positive | 415944 - 417248 | 46651.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
