Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cell division atp-binding protein ftse | HMPREF1862_00362 | Not Available | Positive | 393677 - 394369 | 25660.2 |
| efflux abc transporter, permease protein | HMPREF1862_00363 | Not Available | Positive | 394378 - 395292 | 33568.4 |
| peptidase, m23 family | HMPREF1862_00364 | Not Available | Positive | 395295 - 396614 | 46823.8 |
| ssra-binding protein | HMPREF1862_00365 | Not Available | Positive | 396641 - 397156 | 19482.6 |
| transcription factor whib | HMPREF1862_00366 | Not Available | Negative | 397304 - 397552 | 9273.97 |
| ftsk/spoiiie family protein | HMPREF1862_00367 | Not Available | Negative | 397737 - 400529 | 100333.0 |
| dna ligase | HMPREF1862_00368 | Not Available | Positive | 401082 - 403715 | 95816.9 |
| phospholipase d domain protein | HMPREF1862_00369 | Not Available | Positive | 403762 - 405003 | 47819.1 |
| aspartyl/glutamyl-trna(asn/gln) amidotransferase, c subunit | HMPREF1862_00370 | Not Available | Positive | 405093 - 405389 | 10486.2 |
| aspartyl/glutamyl-trna(asn/gln) amidotransferase, a subunit | HMPREF1862_00371 | Not Available | Positive | 405392 - 406885 | 52246.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
