Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysine--trna ligase | HMPREF1862_00352 | Not Available | Positive | 381006 - 384332 | 122482.0 |
| kinase, pfkb family | HMPREF1862_00353 | Not Available | Positive | 384360 - 385310 | 33633.4 |
| ftsk/spoiiie family protein | HMPREF1862_00354 | Not Available | Positive | 385414 - 387921 | 89205.0 |
| cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | HMPREF1862_00355 | Not Available | Positive | 387972 - 389180 | 44115.9 |
| dna-binding helix-turn-helix protein | HMPREF1862_00356 | Not Available | Positive | 389270 - 389677 | 14774.9 |
| hypothetical protein | HMPREF1862_00357 | Not Available | Positive | 389682 - 389936 | 9275.03 |
| reca protein | HMPREF1862_00358 | Not Available | Positive | 390217 - 391290 | 37963.3 |
| regulatory protein recx | HMPREF1862_00359 | Not Available | Positive | 391312 - 391896 | 21769.9 |
| competence/damage-inducible protein cina domain protein | HMPREF1862_00360 | Not Available | Positive | 391927 - 392406 | 16194.3 |
| peptide chain release factor 2 | HMPREF1862_00361 | Not Available | Positive | 392448 - 393569 | 41983.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
