Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| riboflavin biosynthesis protein ribf | HMPREF1862_00332 | Not Available | Positive | 355234 - 356223 | 36031.0 |
| putative na+/h+ antiporter | HMPREF1862_00333 | Not Available | Positive | 356392 - 358455 | 75011.2 |
| trka protein | HMPREF1862_00334 | Not Available | Negative | 358457 - 360043 | 54109.3 |
| transcriptional regulator, tetr family | HMPREF1862_00335 | Not Available | Negative | 360092 - 360955 | 32152.3 |
| putative coa-substrate-specific enzyme activase | HMPREF1862_00336 | Not Available | Positive | 361017 - 365615 | 167142.0 |
| hypothetical protein | HMPREF1862_00337 | Not Available | Positive | 365741 - 365962 | 8656.11 |
| hypothetical protein | HMPREF1862_00338 | Not Available | Negative | 366047 - 366766 | 25000.3 |
| acyltransferase | HMPREF1862_00339 | Not Available | Positive | 366921 - 368900 | 72576.9 |
| hypothetical protein | HMPREF1862_00340 | Not Available | Negative | 368933 - 369424 | 18306.1 |
| hypothetical protein | HMPREF1862_00341 | Not Available | Negative | 369751 - 369918 | 5911.06 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
