Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosome-binding factor a | HMPREF1862_00322 | Not Available | Positive | 346812 - 347387 | 21217.7 |
| trna pseudouridine synthase b | HMPREF1862_00323 | Not Available | Positive | 347397 - 348455 | 37101.6 |
| abc transporter, permease protein | HMPREF1862_00324 | Not Available | Negative | 348540 - 349346 | 29839.5 |
| abc transporter, permease protein | HMPREF1862_00325 | Not Available | Negative | 349349 - 350242 | 32560.1 |
| abc transporter, solute-binding protein | HMPREF1862_00326 | Not Available | Negative | 350316 - 351674 | 49322.1 |
| kinase, pfkb family | HMPREF1862_00327 | Not Available | Negative | 351701 - 352633 | 33017.1 |
| glycerol-3-phosphate regulon repressor family protein | HMPREF1862_00328 | Not Available | Positive | 352734 - 353450 | 25480.8 |
| family 4 glycosyl hydrolase | HMPREF1862_00329 | Not Available | Positive | 353447 - 354817 | 50029.9 |
| hypothetical protein | HMPREF1862_00330 | Not Available | Positive | 354927 - 355064 | 4783.84 |
| hypothetical protein | HMPREF1862_00331 | Not Available | Positive | 355078 - 355230 | 5169.11 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
