Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-pseudo | Not Available | Not Available | Positive | 337236 - 337307 | Not Available |
| putative udp-n-acetylglucosamine diphosphorylase/glucosamine-1-phosphate n-acetyltransferase | HMPREF1862_00313 | Not Available | Positive | 337417 - 338382 | 34237.6 |
| ribose-phosphate diphosphokinase | HMPREF1862_00314 | Not Available | Positive | 338453 - 339430 | 35384.6 |
| ribosomal protein l25, ctc-form | HMPREF1862_00315 | Not Available | Positive | 339625 - 340248 | 22825.8 |
| aminoacyl-trna hydrolase | HMPREF1862_00316 | Not Available | Positive | 340340 - 340936 | 21507.8 |
| hypothetical protein | HMPREF1862_00317 | Not Available | Negative | 340959 - 342098 | 40572.6 |
| hypothetical protein | HMPREF1862_00318 | Not Available | Positive | 342146 - 342610 | 17111.4 |
| transcription termination factor nusa | HMPREF1862_00319 | Not Available | Positive | 342628 - 343617 | 35833.8 |
| hypothetical protein | HMPREF1862_00321 | Not Available | Negative | 343776 - 343946 | 5892.02 |
| translation initiation factor if-2 | HMPREF1862_00320 | Not Available | Positive | 343899 - 346742 | 100500.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
