Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | DNF00696 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dihydrofolate reductase | HMPREF1862_00303 | Not Available | Negative | 325682 - 326206 | 19300.1 |
| thymidylate synthase | HMPREF1862_00304 | Not Available | Negative | 326216 - 327010 | 30230.8 |
| hypothetical protein | HMPREF1862_00305 | Not Available | Negative | 327131 - 327961 | 29047.2 |
| hypothetical protein | HMPREF1862_00306 | Not Available | Positive | 328151 - 328612 | 17169.5 |
| atpase/histidine kinase/dna gyrase b/hsp90 domain protein | HMPREF1862_00307 | Not Available | Positive | 328680 - 330128 | 52709.1 |
| hydrolase, tatd family | HMPREF1862_00308 | Not Available | Positive | 330129 - 331067 | 34242.4 |
| hypothetical protein | HMPREF1862_00309 | Not Available | Positive | 331273 - 332325 | 37146.7 |
| dimethyladenosine transferase | HMPREF1862_00310 | Not Available | Positive | 332338 - 334452 | 74466.5 |
| abc transporter, atp-binding protein | HMPREF1862_00311 | Not Available | Positive | 334440 - 336320 | 68261.5 |
| transcriptional regulator, marr family | HMPREF1862_00312 | Not Available | Negative | 336401 - 336937 | 20239.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
